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---+ Dose Profiler simulation @ GSI %TOC% ---+ ---+ Working @ GSI * First of all one has to log onto the gateway (the kronos cluster is not directly accessible from outside) * ssh -X -Y -C username@lx-pool.gsi.de * On the lx-pool cluster one has some space (~100 GB) in a given home under /u/username. Such space is limited and is not 'seen' by the kronos machines. * To submit the jobs and use the computing resources, one has to log onto the kronos cluster: * ssh -X -Y -C username@kronos.hpc.gsi.de * On kronos one has access to the nyx filesystem * /lustre/nyx/bio/first/ * Such filesystem is accessible from all the kronos nodes, used to run the jobs using slurm * Eg.: vincenzo and alessio have their homes under /lustre/nyx/bio/first/vpatera and /lustre/nyx/bio/first/asarti * To setup the software tools needed to run fluka or root on the kronos cluster use: * <p>export FLUKA=/lustre/nyx/bio/first/vpatera/local/fluka_2017<br />export FLUPRO=$FLUKAGSI<br />export FLUTIL=$FLUKAGSI/flutil<br />export FLUFOR=gfortran</p> <p>export ROOTSYS=/cvmfs/it.gsi.de/root/v6-06-06<br />export LD_LIBRARY_PATH=$ROOTSYS/lib/root:$ROOTSYS/lib</p> * To use root: * module use /cvmfs/it.gsi.de/modulefiles * module use /cvmfs/it.gsi.de/root/v6-06-06 * To submit jobs using the slurm queue one has to have the slurm account. * A slurm tutorial [[https://wiki.gsi.de/foswiki/bin/view/Linux/SlurmUsage][can be found here]] * To start with slurm first of all check if you can the commandsbatch /lustre/nyx/bio/first/asarti/test.sh * Once you know better what you are doing, check how to submit array of jobs havin a look at: /lustre/nyx/bio/first/asarti/DPSimulation/ScriptSubmission_v0.sh -- %USERSIG{AlessioSarti - 2018-10-03}% ---++ Comments %COMMENT%
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Topic revision: r1 - 2018-10-03
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AlessioSarti
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